STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mhar_2262Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit. (389 aa)    
Predicted Functional Partners:
Mhar_0435
Carbonate dehydratase.
   
 
 0.903
Mhar_0440
Phosphoglycolate phosphatase; Catalyzes the dephosphorylation of 2-phosphoglycolate.
    
 0.903
Mhar_2272
Ribose-1,5-bisphosphate isomerase, e2b2 family; Belongs to the eIF-2B alpha/beta/delta subunits family.
 
  
 0.763
Mhar_0025
Class II aldolase/adducin family protein.
  
  
 0.687
Mhar_0184
Phosphoribulokinase/uridine kinase family.
 
   
 0.682
Mhar_0926
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily.
 
  
 0.634
Mhar_1412
F420H2 dehydrogenase, subunit D.
     
 0.561
thi4
Ribose 1,5-bisphosphate isomerase; Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur.
     
 0.520
Mhar_1240
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.484
Mhar_0827
Putative thymidine phosphorylase; Catalyzes the conversion of AMP and phosphate to adenine and ribose 1,5-bisphosphate (R15P). Exhibits phosphorylase activity toward CMP and UMP in addition to AMP. Functions in an archaeal AMP degradation pathway, together with R15P isomerase and RubisCO. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.
 
   
 0.460
Your Current Organism:
Methanosaeta harundinacea
NCBI taxonomy Id: 1110509
Other names: M. harundinacea 6Ac, Methanosaeta harundinacea 6Ac, Methanosaeta sp. 6Ac
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