STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icdIsocitrate dehydrogenase [NADP] Icd; Belongs to the monomeric-type IDH family. (745 aa)    
Predicted Functional Partners:
acn
Aconitate hydratase Acn.
  
 
 0.964
ldh
L-lactate dehydrogenase Ldh; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
  
 0.904
gltB1
Glutamate synthase large subunit GltB.
     
 0.870
AFA72844.1
Putative ferredoxin-dependent glutamate synthase.
     
 0.870
gltB3
Ferredoxin-dependent glutamate synthase 1.
     
 0.870
purB
Adenylosuccinate lyase PurB; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
  0.833
AFA72963.1
Putative NAD-specific glutamate dehydrogenase.
   
 
 0.825
argH
Argininosuccinate lyase ArgH.
    
 0.815
gltD
Glutamate synthase small subunit GltD.
   
 
 0.813
gltB2
Glutamate synthase [NADPH] small chain GltB.
   
 
 0.813
Your Current Organism:
Gordonia polyisoprenivorans
NCBI taxonomy Id: 1112204
Other names: G. polyisoprenivorans VH2, Gordonia polyisoprenivorans VH2, Gordonia polyisoprenivorans str. VH2, Gordonia polyisoprenivorans strain VH2
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