STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gadBGlutamate decarboxylase GadB; Belongs to the group II decarboxylase family. (469 aa)    
Predicted Functional Partners:
glsA
Glutaminase GlsA; Belongs to the glutaminase family.
  
 
 0.948
panC
Pantothenate synthetase PanC; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
 
 0.945
AFA71949.1
Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.940
gabT
4-aminobutyrate transaminase GabT; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.940
AFA75404.1
Putative 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.940
gltB1
Glutamate synthase large subunit GltB.
    
 0.936
AFA72844.1
Putative ferredoxin-dependent glutamate synthase.
    
 0.936
gltB3
Ferredoxin-dependent glutamate synthase 1.
    
 0.936
AFA71331.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.920
dhaS1
Aldehyde dehydrogenase DhaS.
   
 0.920
Your Current Organism:
Gordonia polyisoprenivorans
NCBI taxonomy Id: 1112204
Other names: G. polyisoprenivorans VH2, Gordonia polyisoprenivorans VH2, Gordonia polyisoprenivorans str. VH2, Gordonia polyisoprenivorans strain VH2
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