STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000527095_02238Unannotated protein. (580 aa)    
Predicted Functional Partners:
GCA_000527095_02237
Unannotated protein.
 
    0.817
GCA_000527095_02236
Unannotated protein.
       0.784
GCA_000527095_00134
Unannotated protein.
     
 0.671
GCA_000527095_00904
Unannotated protein.
 
 
  0.657
GCA_000527095_02588
Unannotated protein.
    
  0.653
GCA_000527095_02854
Unannotated protein.
    
  0.653
GCA_000527095_02809
Unannotated protein.
  
     0.620
GCA_000527095_00276
Unannotated protein.
  
    0.593
GCA_000527095_02870
Unannotated protein.
  
  
  0.577
GCA_000527095_02239
Unannotated protein.
       0.567
Your Current Organism:
Methylosarcina lacus
NCBI taxonomy Id: 1114263
Other names: M. lacus LW14, Methylosarcina lacus LW14, Methylosarcina lacus str. LW14, Methylosarcina lacus strain LW14
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