STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcp2Hcp2; Secreted protein Hcp (166 aa)    
Predicted Functional Partners:
impC3
ImpC; Type VI secretion system ImpC
 
 0.983
impB3
ImpB; Type VI secretion system ImpB
 
 0.981
impC
ImpC; Type VI secretion protein ImpC
 
 0.955
impC2
ImpC; Type VI secretion system ImpC; Protein involved in protein secretion by the type VI secretion system
 
 0.946
impH3
ImpH; Type VI secretion system ImpH/VasB; Protein involved in ATP binding, protein serine/threonine kinase activity, auxin biosynthetic process and protein amino acid phosphorylation
 
 
 0.923
tssE2
TssE2
 
  
 0.865
impB
ImpB; Type VI secretion protein ImpB
 
 0.855
icmF2
IcmF2; Type VI secretion system IcmF-related protein; Protein involved in ATP binding, protein serine/threonine kinase activity, auxin biosynthetic process and protein amino acid phosphorylation
 
 
 0.855
impJ3
ImpJ; Type VI secretion system ImpJ/VasE
 
  
 0.847
impB2
ImpB; Type VI secretion system ImpB
  
 0.836
Your Current Organism:
Pseudomonas fluorescens F113
NCBI taxonomy Id: 1114970
Other names: P. fluorescens F113, Pseudomonas fluorescens F113, Pseudomonas fluorescens str. F113, Pseudomonas fluorescens strain F113
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