Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KRL56830.1 | KRL57408.1 | FD35_GL001123 | FD35_GL000423 | Single-strand DNA binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Primosomal protein DnaI; Belongs to the DnaA family. | 0.431 |
| KRL56830.1 | recF | FD35_GL001123 | FD35_GL001128 | Single-strand DNA binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Dna replication and repair protein recf; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.512 |
| KRL56830.1 | recO | FD35_GL001123 | FD35_GL000160 | Single-strand DNA binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | Recombinational DNA repair protein (RecF pathway); Involved in DNA repair and RecF pathway recombination. | 0.683 |
| KRL56830.1 | topA | FD35_GL001123 | FD35_GL000218 | Single-strand DNA binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.960 |
| KRL57149.1 | KRL57151.1 | FD35_GL000156 | FD35_GL000158 | Phosphate starvation-inducible protein. | Diacylglycerol kinase. | 0.734 |
| KRL57149.1 | era | FD35_GL000156 | FD35_GL000159 | Phosphate starvation-inducible protein. | Gtp-binding protein era like protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.812 |
| KRL57149.1 | recO | FD35_GL000156 | FD35_GL000160 | Phosphate starvation-inducible protein. | Recombinational DNA repair protein (RecF pathway); Involved in DNA repair and RecF pathway recombination. | 0.831 |
| KRL57149.1 | ybeY | FD35_GL000156 | FD35_GL000157 | Phosphate starvation-inducible protein. | Metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.929 |
| KRL57151.1 | KRL57149.1 | FD35_GL000158 | FD35_GL000156 | Diacylglycerol kinase. | Phosphate starvation-inducible protein. | 0.734 |
| KRL57151.1 | era | FD35_GL000158 | FD35_GL000159 | Diacylglycerol kinase. | Gtp-binding protein era like protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.822 |
| KRL57151.1 | recO | FD35_GL000158 | FD35_GL000160 | Diacylglycerol kinase. | Recombinational DNA repair protein (RecF pathway); Involved in DNA repair and RecF pathway recombination. | 0.729 |
| KRL57151.1 | ybeY | FD35_GL000158 | FD35_GL000157 | Diacylglycerol kinase. | Metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.961 |
| KRL57408.1 | KRL56830.1 | FD35_GL000423 | FD35_GL001123 | Primosomal protein DnaI; Belongs to the DnaA family. | Single-strand DNA binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.431 |
| KRL57408.1 | recO | FD35_GL000423 | FD35_GL000160 | Primosomal protein DnaI; Belongs to the DnaA family. | Recombinational DNA repair protein (RecF pathway); Involved in DNA repair and RecF pathway recombination. | 0.691 |
| KRL57408.1 | recX | FD35_GL000423 | FD35_GL000844 | Primosomal protein DnaI; Belongs to the DnaA family. | Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family. | 0.488 |
| era | KRL57149.1 | FD35_GL000159 | FD35_GL000156 | Gtp-binding protein era like protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Phosphate starvation-inducible protein. | 0.812 |
| era | KRL57151.1 | FD35_GL000159 | FD35_GL000158 | Gtp-binding protein era like protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Diacylglycerol kinase. | 0.822 |
| era | recO | FD35_GL000159 | FD35_GL000160 | Gtp-binding protein era like protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Recombinational DNA repair protein (RecF pathway); Involved in DNA repair and RecF pathway recombination. | 0.839 |
| era | topA | FD35_GL000159 | FD35_GL000218 | Gtp-binding protein era like protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.542 |
| era | ybeY | FD35_GL000159 | FD35_GL000157 | Gtp-binding protein era like protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.993 |
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