STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL56981.1Cellulose synthase catalytic subunit. (681 aa)    
Predicted Functional Partners:
KRL56980.1
N-acetylglucosaminyltransferase.
 
 
 0.986
KRL56982.1
Ggdef domain protein.
 
 
 0.972
KRL56977.1
Hypothetical protein.
 
  
 0.933
KRL56979.1
Hypothetical protein.
 
  
 0.931
KRL56978.1
Putative membrane protein.
 
 
 
 0.929
KRL57164.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.798
KRL56983.1
Hypothetical protein.
 
  
 0.791
dnaK
Chaperone protein dnak (heat shock protein 70) (heat shock 70 kda protein) (hsp70); Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.786
ribA
Rep protein; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
    
  0.785
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.781
Your Current Organism:
Lactobacillus rossiae
NCBI taxonomy Id: 1114972
Other names: L. rossiae DSM 15814, Lactobacillus rossiae DSM 15814, Lactobacillus rossiae str. DSM 15814, Lactobacillus rossiae strain DSM 15814
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.