STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (642 aa)    
Predicted Functional Partners:
AFY36468.1
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: amr:AM1_4201 peptidyl-arginine deiminase; PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; PRIAM: Agmatine deiminase; SPTR: Porphyromonas-type peptidyl-arginine deiminase, putative; Belongs to the agmatine deiminase family.
 
  
 0.949
AFY39232.1
Agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR005925:IPR006035; KEGG: syp:SYNPCC7002_A1109 agmatinase, putative; PFAM: Ureohydrolase; PRIAM: Agmatinase; SPTR: Agmatinase, putative; TIGRFAM: Putative agmatinase; Belongs to the arginase family.
  
 
 0.930
AFY36898.1
Agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035; KEGG: mar:MAE_18840 agmatinase; PFAM: Ureohydrolase; PRIAM: Agmatinase; SPTR: Arginase family; Belongs to the arginase family.
  
 
 0.923
AFY40247.1
Agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase; arginase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035; KEGG: syp:SYNPCC7002_A1751 arginase/agmatinase family protein; PFAM: Ureohydrolase; PRIAM: Agmatinase; SPTR: Arginase/agmatinase family protein; Belongs to the arginase family.
  
 
 0.923
argH
PFAM: Lyase; TIGRFAM: argininosuccinate lyase; COGs: COG0165 Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; InterPro IPR009049:IPR000362; KEGG: syp:SYNPCC7002_A2487 argininosuccinate lyase; PFAM: Fumarate lyase; PRIAM: Argininosuccinate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: Argininosuccinate lyase.
     
 0.838
AFY36611.1
PFAM: Peptidase M15; InterPro IPR013230; KEGG: cyt:cce_3923 hypothetical protein; PFAM: Peptidase M15A, C-terminal; SPTR: Peptidase M15 family.
       0.485
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.446
Your Current Organism:
Leptolyngbya sp. PCC7376
NCBI taxonomy Id: 111781
Other names: Enugrolinea bermudensis PCC 7376, L. sp. PCC 7376, Leptolyngbya PCC7376, Leptolyngbya sp. PCC 7376
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