H257_04184 protein (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H257_04184

TPR_REGION domain-containing protein. (993 aa)

Predicted Functional Partners:

H257_13338

0.857

H257_11549

0.821

H257_09945

0.789

H257_03770

0.789

H257_10750

0.774

H257_13778

0.773

B5M09_001944

0.768

B5M09_006880

0.749

H257_04215

0.741

H257_01649

0.741

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_001944	B5M09_006880	W4GM39	W4GAS7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	NUC173 domain-containing protein.	0.839
B5M09_001944	H257_01649	W4GM39	W4H5A7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Tr-type G domain-containing protein.	0.646
B5M09_001944	H257_03770	W4GM39	W4GY83	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	WD_REPEATS_REGION domain-containing protein.	0.796
B5M09_001944	H257_04184	W4GM39	W4GVW3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TPR_REGION domain-containing protein.	0.768
B5M09_001944	H257_04215	W4GM39	W4GX54	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	WD_REPEATS_REGION domain-containing protein.	0.698
B5M09_001944	H257_09945	W4GM39	W4G9N6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	WD_REPEATS_REGION domain-containing protein.	0.796
B5M09_001944	H257_10750	W4GM39	W4G4M2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	BP28CT domain-containing protein.	0.801
B5M09_001944	H257_11549	W4GM39	W4G2E5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.866
B5M09_001944	H257_13338	W4GM39	W4FVE0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	WD_REPEATS_REGION domain-containing protein.	0.897
B5M09_001944	H257_13778	W4GM39	W4FT36	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.884
B5M09_006880	B5M09_001944	W4GAS7	W4GM39	NUC173 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.839
B5M09_006880	H257_03770	W4GAS7	W4GY83	NUC173 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.982
B5M09_006880	H257_04184	W4GAS7	W4GVW3	NUC173 domain-containing protein.	TPR_REGION domain-containing protein.	0.749
B5M09_006880	H257_04215	W4GAS7	W4GX54	NUC173 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.768
B5M09_006880	H257_09945	W4GAS7	W4G9N6	NUC173 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.982
B5M09_006880	H257_10750	W4GAS7	W4G4M2	NUC173 domain-containing protein.	BP28CT domain-containing protein.	0.912
B5M09_006880	H257_11549	W4GAS7	W4G2E5	NUC173 domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.949
B5M09_006880	H257_13338	W4GAS7	W4FVE0	NUC173 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.885
B5M09_006880	H257_13778	W4GAS7	W4FT36	NUC173 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.881
H257_01649	B5M09_001944	W4H5A7	W4GM39	Tr-type G domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.646