H257_02915 protein (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H257_02915

RING-type domain-containing protein. (492 aa)

Predicted Functional Partners:

H257_17227

0.664

DYB35_010749

0.531

H257_15295

0.523

H257_13610

0.522

H257_09883

0.514

H257_13653

0.490

H257_02840

0.490

H257_00875

0.490

H257_18313

0.473

H257_01970

0.473

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DYB35_010749	H257_02915	W4FR70	W4H1A4	Uncharacterized protein.	RING-type domain-containing protein.	0.531
DYB35_010749	H257_09883	W4FR70	W4G890	Uncharacterized protein.	Phosphoinositide phospholipase C.	0.867
DYB35_010749	H257_13610	W4FR70	W4FTH9	Uncharacterized protein.	Uncharacterized protein.	0.786
DYB35_010749	H257_15295	W4FR70	W4FQ51	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.754
H257_00875	H257_02915	W4HCP6	W4H1A4	Uncharacterized protein.	RING-type domain-containing protein.	0.490
H257_00875	H257_17227	W4HCP6	W4FHB2	Uncharacterized protein.	Uncharacterized protein.	0.950
H257_01970	H257_02915	W4H4W3	W4H1A4	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	RING-type domain-containing protein.	0.473
H257_01970	H257_09883	W4H4W3	W4G890	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Phosphoinositide phospholipase C.	0.857
H257_02840	H257_02915	W4GYY1	W4H1A4	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	RING-type domain-containing protein.	0.490
H257_02840	H257_17227	W4GYY1	W4FHB2	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Uncharacterized protein.	0.950
H257_02915	DYB35_010749	W4H1A4	W4FR70	RING-type domain-containing protein.	Uncharacterized protein.	0.531
H257_02915	H257_00875	W4H1A4	W4HCP6	RING-type domain-containing protein.	Uncharacterized protein.	0.490
H257_02915	H257_01970	W4H1A4	W4H4W3	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.473
H257_02915	H257_02840	W4H1A4	W4GYY1	RING-type domain-containing protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.490
H257_02915	H257_09883	W4H1A4	W4G890	RING-type domain-containing protein.	Phosphoinositide phospholipase C.	0.514
H257_02915	H257_13610	W4H1A4	W4FTH9	RING-type domain-containing protein.	Uncharacterized protein.	0.522
H257_02915	H257_13653	W4H1A4	W4FTP4	RING-type domain-containing protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.490
H257_02915	H257_15295	W4H1A4	W4FQ51	RING-type domain-containing protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.523
H257_02915	H257_17227	W4H1A4	W4FHB2	RING-type domain-containing protein.	Uncharacterized protein.	0.664
H257_02915	H257_18313	W4H1A4	W4FBL5	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.473