H257_02424 protein (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H257_02424

ANK_REP_REGION domain-containing protein. (366 aa)

Predicted Functional Partners:

DYB28_002226

0.646

H257_00378

0.617

B5M09_002013

0.605

H257_16293

0.590

B5M09_004925

0.583

B5M09_002991

0.564

H257_05857

0.561

KATNAL2

0.547

H257_13610

0.517

H257_04929

0.509

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_002013	B5M09_002991	W4GMH5	W4G5N5	E3 ubiquitin-protein ligase RBX1.	Ubiquitin-like domain-containing protein.	0.985
B5M09_002013	B5M09_004925	W4GMH5	W4FWK7	E3 ubiquitin-protein ligase RBX1.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.906
B5M09_002013	DYB28_002226	W4GMH5	W4G2V4	E3 ubiquitin-protein ligase RBX1.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.982
B5M09_002013	H257_00378	W4GMH5	W4HCB8	E3 ubiquitin-protein ligase RBX1.	Serine/threonine-protein phosphatase.	0.615
B5M09_002013	H257_02424	W4GMH5	W4H2Q0	E3 ubiquitin-protein ligase RBX1.	ANK_REP_REGION domain-containing protein.	0.605
B5M09_002013	H257_05857	W4GMH5	W4GNL5	E3 ubiquitin-protein ligase RBX1.	WD_REPEATS_REGION domain-containing protein.	0.554
B5M09_002013	H257_13610	W4GMH5	W4FTH9	E3 ubiquitin-protein ligase RBX1.	Uncharacterized protein.	0.438
B5M09_002013	H257_16293	W4GMH5	W4FJA0	E3 ubiquitin-protein ligase RBX1.	Uncharacterized protein.	0.455
B5M09_002013	KATNAL2	W4GMH5	W4HC36	E3 ubiquitin-protein ligase RBX1.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.975
B5M09_002991	B5M09_002013	W4G5N5	W4GMH5	Ubiquitin-like domain-containing protein.	E3 ubiquitin-protein ligase RBX1.	0.985
B5M09_002991	B5M09_004925	W4G5N5	W4FWK7	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.472
B5M09_002991	DYB28_002226	W4G5N5	W4G2V4	Ubiquitin-like domain-containing protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.998
B5M09_002991	H257_02424	W4G5N5	W4H2Q0	Ubiquitin-like domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.564
B5M09_002991	H257_04929	W4G5N5	W4GSB5	Ubiquitin-like domain-containing protein.	COMM domain-containing protein.	0.648
B5M09_002991	H257_05857	W4G5N5	W4GNL5	Ubiquitin-like domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.459
B5M09_002991	H257_16293	W4G5N5	W4FJA0	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.428
B5M09_004925	B5M09_002013	W4FWK7	W4GMH5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	E3 ubiquitin-protein ligase RBX1.	0.906
B5M09_004925	B5M09_002991	W4FWK7	W4G5N5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.472
B5M09_004925	DYB28_002226	W4FWK7	W4G2V4	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.570
B5M09_004925	H257_02424	W4FWK7	W4H2Q0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.583