STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF63716.1DDE superfamily endonuclease. (158 aa)    
Predicted Functional Partners:
SHF65810.1
Homeodomain-like domain-containing protein.
 
     0.885
SHF31777.1
Hypothetical protein.
 
     0.804
SHF62052.1
Hypothetical protein.
 
     0.804
SHF33851.1
Winged helix-turn helix.
 
     0.790
SHE82623.1
Homeodomain-like domain-containing protein.
 
     0.775
SHF62711.1
Homeodomain-like domain-containing protein.
 
     0.775
SHF46125.1
Homeodomain-like domain-containing protein.
  
     0.772
SHF11168.1
Homeodomain-like domain-containing protein.
  
     0.770
SHF42207.1
Homeodomain-like domain-containing protein.
  
     0.770
SHE57451.1
Homeodomain-like domain-containing protein.
  
     0.769
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.