STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM06679.1ABC-2 type transport system permease protein. (240 aa)    
Predicted Functional Partners:
SHM06655.1
ABC-2 type transport system permease protein.
 
   
 0.966
SHM06702.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.965
SHM06626.1
Signal transduction histidine kinase.
 
   
 0.954
SHM06636.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
     0.913
SHM06710.1
Hypothetical protein.
       0.572
SHM51788.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.527
SHM13251.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.505
SHM82914.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.472
SHM06737.1
Carbonic anhydrase.
       0.452
Your Current Organism:
Anaerosporobacter mobilis
NCBI taxonomy Id: 1120996
Other names: A. mobilis DSM 15930, Anaerosporobacter mobilis DSM 15930
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.