STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM99274.1Lipopolysaccharide export system protein LptC. (234 aa)    
Predicted Functional Partners:
SEM97455.1
Lipopolysaccharide export system ATP-binding protein.
  
 
 0.998
SEN36704.1
Lipopolysaccharide export system permease protein.
 
 
 0.997
SEN36739.1
Lipopolysaccharide export system permease protein.
  
 
 0.996
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
 
 
 0.974
SEM99292.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase).
  
  
 0.906
SEM99326.1
Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  
 0.854
SEM99243.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.807
SEN89112.1
Ubiquinone biosynthesis protein UbiJ.
  
     0.705
SEN52153.1
HemY protein.
  
     0.702
SEN48476.1
4-amino-4-deoxy-L-arabinose transferase.
  
     0.692
Your Current Organism:
Brachymonas denitrificans
NCBI taxonomy Id: 1121117
Other names: B. denitrificans DSM 15123, Brachymonas denitrificans DSM 15123
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.