STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG68906.1DNA-binding transcriptional regulator YhcF, GntR family. (121 aa)    
Predicted Functional Partners:
SHG68875.1
ABC-2 type transport system ATP-binding protein.
    0.923
SHG85148.1
Hypothetical protein.
  
  
 0.580
SHG68840.1
Hypothetical protein.
       0.501
SHG85213.1
DNA-binding transcriptional regulator YhcF, GntR family.
  
     0.476
SHG68938.1
Uncharacterized OsmC-related protein.
       0.400
Your Current Organism:
Asaccharospora irregularis
NCBI taxonomy Id: 1121321
Other names: A. irregularis DSM 2635, Asaccharospora irregularis DSM 2635, Clostridium irregulare DSM 2635
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.