STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC21185.1Iron (metal) dependent repressor, DtxR family. (183 aa)    
Predicted Functional Partners:
SMC17933.1
Signal peptidase I Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family.
   
    0.855
SMC23718.1
Zinc transport system permease protein.
  
 
 0.813
SMC23722.1
Zinc transport system substrate-binding protein.
  
 
 0.807
SMC23720.1
Zinc transport system ATP-binding protein.
  
 
 0.801
tpx
Thiol peroxidase (atypical 2-Cys peroxiredoxin); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.573
SMC21190.1
Hypothetical protein.
       0.551
SMC20789.1
Cu+-exporting ATPase.
     
 0.534
SMC20718.1
Zinc transporter, ZIP family.
  
  
 0.528
fur
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
  
 0.511
fur-2
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
  
 0.511
Your Current Organism:
Desulfacinum hydrothermale
NCBI taxonomy Id: 1121390
Other names: D. hydrothermale DSM 13146, Desulfacinum hydrothermale DSM 13146
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