STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO42522.1Diguanylate cyclase (GGDEF) domain-containing protein. (651 aa)    
Predicted Functional Partners:
SHO50321.1
PAS domain S-box-containing protein.
 0.992
SHO46256.1
PAS domain S-box-containing protein.
  
 0.989
SHO51322.1
Signal transduction histidine kinase.
 
 0.989
SHO42692.1
Signal transduction histidine kinase.
 
 0.988
SHO47804.1
PAS domain S-box-containing protein.
  
 0.988
SHO49785.1
PAS domain S-box-containing protein.
 
 0.988
SHO51605.1
PAS domain S-box-containing protein.
  
 0.988
SHO49648.1
PAS domain S-box-containing protein.
  
 0.985
SHO42525.1
Transglutaminase-like cysteine proteinase BTLCP.
 
 
 0.982
SHO44553.1
Response regulator receiver domain-containing protein.
  
 0.982
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.