STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO42746.1Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (319 aa)    
Predicted Functional Partners:
SHO42748.1
Oligopeptide transport system permease protein.
 
 0.998
SHO48128.1
Peptide/nickel transport system permease protein.
 
 0.994
SHO49352.1
Dipeptide transport system permease protein.
 
 0.994
SHO42832.1
Peptide/nickel transport system permease protein.
 
 0.992
SHO42749.1
Oligopeptide transport system permease protein.
 0.985
SHO42835.1
Fe3+-transporting ATPase.
 
0.974
SHO51037.1
Microcin C transport system permease protein.
  
 0.974
SHO42750.1
Oligopeptide transport system substrate-binding protein.
 
 0.962
SHO48130.1
Peptide/nickel transport system permease protein.
 0.955
SHO49354.1
Dipeptide transport system permease protein.
 0.940
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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