STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO42845.1Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (485 aa)    
Predicted Functional Partners:
SHO42791.1
Trk system potassium uptake protein TrkA.
 
 
 0.947
SHO49588.1
Trk system potassium uptake protein TrkA.
 
 
 0.947
SHO52746.1
Trk system potassium uptake protein TrkA.
 
 
 0.947
SHO52747.1
Trk system potassium uptake protein TrkA.
 
 
 0.944
SHO47332.1
Chloride channel protein, CIC family.
  
 
 0.839
SHO46768.1
Transporter, CPA2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.830
SHO42650.1
TrkA-C domain-containing protein.
  
 
 0.824
SHO51286.1
TrkA-C domain-containing protein.
  
 
 0.824
SHO49028.1
Trk K+ transport system, NAD-binding component.
 
 
 0.800
SHO44394.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 
 0.782
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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