STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO43828.12,3-dihydroxyphenylpropionate 1,2-dioxygenase. (319 aa)    
Predicted Functional Partners:
SHO43821.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
  
  
 0.781
SHO43826.1
SnoaL-like domain-containing protein.
       0.741
SHO43830.1
Uncharacterized conserved protein, DUF849 family.
       0.701
SHO51843.1
LPS sulfotransferase NodH.
  
 
 0.699
SHO45611.1
Assimilatory nitrite reductase (NAD(P)H) small subunit.
 
 
 0.639
SHO48234.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
 
 0.607
SHO43819.1
NAD(P)H-dependent FMN reductase.
  
 
 0.579
SHO44092.1
Pimeloyl-ACP methyl ester carboxylesterase.
   
 
 0.565
SHO51087.1
Pimeloyl-ACP methyl ester carboxylesterase.
   
 
 0.565
SHO52779.1
Hypothetical protein.
 
  
 0.565
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.