STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO45413.1C4-dicarboxylate-binding protein DctP. (330 aa)    
Predicted Functional Partners:
SHO45410.1
C4-dicarboxylate transporter, DctM subunit.
 
 0.989
SHO45411.1
C4-dicarboxylate transporter, DctQ subunit.
 
  
 0.920
SHO52781.1
C4-dicarboxylate transporter, DctM subunit.
  
 0.767
SHO51592.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.710
SHO43246.1
TRAP transporter T-component.
   
 
 0.680
SHO44125.1
C4-dicarboxylate transporter, DctM subunit.
  
 0.674
SHO51151.1
TRAP transporter, DctM subunit.
  
 0.628
SHO53558.1
TRAP transporter, DctM subunit.
  
 0.595
SHO44082.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.594
SHO43093.1
TRAP transporter, DctM subunit.
  
 0.587
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.