STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO48002.1acyl-CoA thioesterase-1. (236 aa)    
Predicted Functional Partners:
SHO48003.1
Putative ABC transport system permease protein.
 
     0.955
SHO47904.1
Protein of unknown function.
 
 0.904
SHO44151.1
Right handed beta helix region.
  
 0.889
SHO52258.1
S-layer protein.
  
 0.889
SHO52855.1
Phage conserved hypothetical protein, phiE125 gp8 family.
  
 0.876
SHO48004.1
Putative ABC transport system ATP-binding protein.
 
     0.849
SHO47999.1
PAS domain S-box-containing protein.
       0.762
SHO44379.1
beta-N-acetylhexosaminidase.
    
 0.639
SHO44155.1
Putative baseplate assembly protein.
   
  0.624
SHO45482.1
Hypothetical protein.
   
  0.624
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.