SHO48128.1 protein (Desulfopila aestuarii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHO48128.1

Peptide/nickel transport system permease protein. (272 aa)

Predicted Functional Partners:

SHO48126.1

0.998

SHO42746.1

0.994

SHO49351.1

0.994

SHO49349.1

0.993

SHO42744.1

0.992

SHO48130.1

0.989

SHO51678.1

0.987

SHO42834.1

0.982

SHO49354.1

0.970

SHO48132.1

0.966

Your Current Organism:

Desulfopila aestuarii

NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHO42744.1	SHO42746.1	SAMN02745220_00129	SAMN02745220_00130	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.905
SHO42744.1	SHO48126.1	SAMN02745220_00129	SAMN02745220_02143	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.880
SHO42744.1	SHO48128.1	SAMN02745220_00129	SAMN02745220_02144	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.992
SHO42744.1	SHO48130.1	SAMN02745220_00129	SAMN02745220_02145	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.908
SHO42744.1	SHO48132.1	SAMN02745220_00129	SAMN02745220_02146	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein.	0.538
SHO42744.1	SHO49351.1	SAMN02745220_00129	SAMN02745220_02812	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.607
SHO42744.1	SHO49354.1	SAMN02745220_00129	SAMN02745220_02814	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide transport system permease protein.	0.944
SHO42744.1	SHO51678.1	SAMN02745220_00129	SAMN02745220_04149	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Microcin C transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.635
SHO42746.1	SHO42744.1	SAMN02745220_00130	SAMN02745220_00129	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.905
SHO42746.1	SHO48126.1	SAMN02745220_00130	SAMN02745220_02143	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.926
SHO42746.1	SHO48128.1	SAMN02745220_00130	SAMN02745220_02144	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.994
SHO42746.1	SHO48130.1	SAMN02745220_00130	SAMN02745220_02145	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.955
SHO42746.1	SHO48132.1	SAMN02745220_00130	SAMN02745220_02146	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein.	0.773
SHO42746.1	SHO49349.1	SAMN02745220_00130	SAMN02745220_02811	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.590
SHO42746.1	SHO49354.1	SAMN02745220_00130	SAMN02745220_02814	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide transport system permease protein.	0.940
SHO42746.1	SHO51678.1	SAMN02745220_00130	SAMN02745220_04149	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Microcin C transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.635
SHO42834.1	SHO48126.1	SAMN02745220_00179	SAMN02745220_02143	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.889
SHO42834.1	SHO48128.1	SAMN02745220_00179	SAMN02745220_02144	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.982
SHO42834.1	SHO48130.1	SAMN02745220_00179	SAMN02745220_02145	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.896
SHO42834.1	SHO48132.1	SAMN02745220_00179	SAMN02745220_02146	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein.	0.601