STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO49759.1DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain. (474 aa)    
Predicted Functional Partners:
SHO42530.1
Ferredoxin-type protein NapG.
    
   0.863
SHO51843.1
LPS sulfotransferase NodH.
  
 
 0.824
SHO45443.1
Chorismate mutase /prephenate dehydratase.
  
 
 0.815
SHO45327.1
Prephenate dehydratase.
    
 0.814
SHO50398.1
Phenazine biosynthesis protein phzE.
   
 
 0.776
SHO49072.1
Iron-sulfur cluster-binding protein.
   
   0.755
SHO46986.1
Acetyl esterase/lipase.
   
 
 0.709
SHO46253.1
FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase.
 
 
 0.686
SHO49939.1
Dihydrolipoamide dehydrogenase.
  
 
 0.670
SHO42642.1
Aromatic-amino-acid transaminase.
  
 0.657
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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