STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO50475.1Two-component system, NtrC family, response regulator PilR. (464 aa)    
Predicted Functional Partners:
SHO50476.1
PAS/PAC sensor signal transduction histidine kinase.
 
  0.984
SHO43252.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.945
SHO49818.1
CheB methylesterase.
  
 0.875
SHO47739.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.810
SHO53507.1
PAS domain-containing protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
0.800
SHO53059.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.791
SHO49648.1
PAS domain S-box-containing protein.
  
0.775
SHO47971.1
PAS domain S-box-containing protein.
  
0.773
SHO46256.1
PAS domain S-box-containing protein.
  
0.760
SHO51322.1
Signal transduction histidine kinase.
  
0.760
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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