STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO51947.1Transglycosylase. (1073 aa)    
Predicted Functional Partners:
SHO46238.1
DivIVA domain-containing protein.
   
 
 0.948
SHO44440.1
Cell division protein FtsI (penicillin-binding protein 3).
   
 0.814
SHO45091.1
Peptidoglycan glycosyltransferase.
   
 0.814
SHO48852.1
Penicillin-binding protein 1A.
   
 0.627
SHO44783.1
Membrane-bound lytic murein transglycosylase B.
     
 0.615
SHO45791.1
Protein of unknown function.
  
     0.569
SHO45576.1
Beta-lactamase class A.
   
 
 0.536
SHO49959.1
Phage shock protein C (PspC) family protein.
  
    0.527
SHO49575.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.511
SHO50323.1
Hypothetical protein.
  
     0.498
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.