STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO52064.1Conjugal transfer pilus assembly protein TraW. (198 aa)    
Predicted Functional Partners:
SHO52068.1
Conjugal transfer pilus assembly protein TraU.
 
   
 0.954
SHO52079.1
Conjugative transfer pilus assembly protein TraH.
 
   
 0.954
SHO52077.1
Conjugal transfer pilus assembly protein TraF.
 
   
 0.953
SHO52074.1
Signal peptidase, peptidase S26.
 
     0.950
SHO52081.1
Conjugal transfer mating pair stabilization protein TraG.
 
   
 0.950
SHO52062.1
Conjugal transfer ATP-binding protein TraC.
 
   
 0.941
SHO52059.1
Conjugal transfer pilus assembly protein TraB.
 
     0.939
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.866
SHO52070.1
Type-F conjugative transfer system pilin assembly protein.
     
 0.804
SHO53470.1
Type IV secretion-system coupling protein DNA-binding domain-containing protein.
 
    0.793
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.