STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO52108.1YMGG-like Gly-zipper. (214 aa)    
Predicted Functional Partners:
SHO49818.1
CheB methylesterase.
    
  0.845
SHO52110.1
Hypothetical protein.
       0.790
SHO52112.1
Carboxyl-terminal processing protease.
       0.780
SHO53059.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 0.767
SHO49648.1
PAS domain S-box-containing protein.
    
  0.763
SHO42819.1
PAS domain S-box-containing protein.
    
  0.755
SHO47739.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
  0.744
SHO46256.1
PAS domain S-box-containing protein.
    
  0.733
SHO51322.1
Signal transduction histidine kinase.
    
  0.733
SHO52751.1
PAS domain S-box-containing protein.
    
  0.720
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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