STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO52250.1Lipopolysaccharide transport system ATP-binding protein. (442 aa)    
Predicted Functional Partners:
SHO45745.1
ABC-type polysaccharide/polyol phosphate export permease.
 
 0.999
SHO52249.1
Lipopolysaccharide transport system permease protein.
 
 0.999
SHO52251.1
Glycosyltransferase, GT2 family.
 
  
 0.952
SHO46111.1
Polysaccharide export outer membrane protein.
  
  
 0.897
SHO52253.1
Hypothetical protein.
 
  
 0.838
SHO52248.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
 
  
 0.826
SHO52252.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
  
  
 0.780
SHO46317.1
comF family protein.
   
    0.771
SHO53262.1
Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).
 
  
 0.721
SHO49581.1
Protein of unknown function.
  
 
 0.700
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.