STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-2tRNA(fMet)-specific endonuclease VapC; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (134 aa)    
Predicted Functional Partners:
SHO53781.1
Antitoxin VapB.
 
 
 0.997
SHO51572.1
Plasmid stability protein.
 
 
 
 0.960
SHO53788.1
Predicted transcriptional regulator.
   
   0.942
SHO52093.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.575
vapC
Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.564
SHO52094.1
Uncharacterized conserved protein, DUF1778 family.
  
     0.485
SHO51575.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
   
 0.439
SHO53783.1
Hypothetical protein.
       0.413
SHO53784.1
Hypothetical protein.
       0.413
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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