STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_0838PFAM: type II and III secretion system protein, transport-associated protein; KEGG: dvm:DvMF_2741 type II and III secretion system protein; Belongs to the bacterial secretin family. (466 aa)    
Predicted Functional Partners:
dsat_0837
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: das:Daes_2914 Flp pilus assembly protein CpaB; SMART: SAF domain protein.
 
  
 0.992
dsat_0841
PFAM: type II secretion system protein E; KEGG: das:Daes_2910 type II secretion system protein E.
  
 0.987
dsat_0840
PFAM: AAA domain; KEGG: das:Daes_2911 response regulator receiver protein.
 
  
 0.985
dsat_0843
PFAM: Type II secretion system F domain-containing protein; KEGG: dde:Dde_2365 hypothetical protein.
 
  
 0.971
dsat_0842
PFAM: Type II secretion system F domain-containing protein; KEGG: dvu:DVU2123 hypothetical protein.
 
  
 0.970
dsat_0836
PFAM: peptidase A24A prepilin type IV; KEGG: dvl:Dvul_1114 peptidase A24A.
 
  
 0.955
dsat_0835
PFAM: Flp/Fap pilin component; KEGG: dvm:DvMF_2745 Flp/Fap pilin component.
 
  
 0.923
dsat_0844
KEGG: dde:Dde_2366 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein, Sporulation domain-containing protein; SMART: Tetratricopeptide repeat-containing protein.
 
     0.865
dsat_1192
PFAM: TadE family protein; KEGG: dma:DMR_14170 hypothetical protein.
 
  
 0.788
dsat_0839
Hypothetical protein.
       0.757
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.