STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1552PFAM: protein of unknown function DUF1049; KEGG: dsa:Desal_1956 hypothetical protein. (122 aa)    
Predicted Functional Partners:
dsat_1553
PFAM: Tetratricopeptide repeat-containing protein, Tetratricopeptide TPR_2 repeat-containing protein; KEGG: drt:Dret_1340 hypothetical protein.
     
 0.767
dsat_1551
PFAM: histidine triad (HIT) protein; KEGG: das:Daes_1547 histidine triad (HIT) protein.
       0.747
mutS
DNA mismatch repair protein mutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
       0.719
dsat_1555
KEGG: drt:Dret_1338 putative lipoprotein.
       0.719
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.716
dsat_1550
KEGG: dma:DMR_22030 nucleotidyltransferase; PFAM: Polynucleotide adenylyltransferase region, CBS domain containing protein, phosphoesterase RecJ domain protein, phosphoesterase DHHA1; SMART: CBS domain containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.484
dsat_2859
PFAM: NAD-dependent epimerase/dehydratase, domain of unknown function DUF1731; KEGG: das:Daes_0146 hypothetical protein.
   
    0.445
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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