STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1823KEGG: dds:Ddes_0311 hypothetical protein. (346 aa)    
Predicted Functional Partners:
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
    0.699
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
    0.639
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; HAMAP : Flagellar hook-basal body complex protein fliE; KEGG: dsa:Desal_1154 flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE.
   
   0.626
dsat_1822
KEGG: amr:AM1_0551 hypothetical protein.
       0.594
dsat_0078
KEGG: drt:Dret_2249 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.
  
  
 0.514
dsat_2782
KEGG: dsa:Desal_3820 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic, Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM.
  
 
 0.448
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.