STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO09705.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (446 aa)    
Predicted Functional Partners:
SIO30092.1
PAS domain S-box-containing protein.
 0.989
SIO26465.1
PAS domain S-box-containing protein.
 0.977
SIN79452.1
Signal transduction histidine kinase.
 0.972
SIO12135.1
Signal transduction histidine kinase.
 
 0.957
SIO39489.1
Hypothetical protein.
 
 0.956
SIN97430.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.943
SIO16153.1
Putative two-component system response regulator.
 0.941
SIO36386.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.936
SIN97144.1
Hypothetical protein.
 0.935
SIO14927.1
PAS domain S-box-containing protein.
 
 0.930
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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