STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO39637.1Transcriptional regulator, AlpA family. (63 aa)    
Predicted Functional Partners:
SIO39622.1
Integrase; Belongs to the 'phage' integrase family.
 
  
 0.879
SIN73116.1
Integrase; Belongs to the 'phage' integrase family.
 
  
 0.802
SIO39650.1
Hypothetical protein.
       0.773
SIO08720.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.770
SIO40518.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.694
SIN78651.1
Pyruvate carboxylase.
  
  
  0.528
SIO36303.1
Aconitase.
     
 0.497
SIN72996.1
Hypothetical protein.
   
    0.459
SIN72986.1
Hypothetical protein.
   
    0.410
Your Current Organism:
Halodesulfovibrio marinisediminis
NCBI taxonomy Id: 1121457
Other names: Desulfovibrio marinisediminis C/L2, Desulfovibrio marinisediminis DSM 17456, Desulfovibrio marinisediminis JCM 14577, Desulfovibrio sp. C/L2, Desulfovibrio sp. JCM 14577, H. marinisediminis DSM 17456, Halodesulfovibrio marinisediminis DSM 17456, Halodesulfovibrio marinisediminis JCM 14577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.