STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000429365_02157Unannotated protein. (499 aa)    
Predicted Functional Partners:
GCA_000429365_02796
Unannotated protein.
  
 
 0.936
GCA_000429365_03236
Unannotated protein.
   
   0.932
GCA_000429365_02510
Unannotated protein.
   
 
  0.845
GCA_000429365_03172
Unannotated protein.
  
  0.810
GCA_000429365_00142
Unannotated protein.
  
  0.776
GCA_000429365_01961
Unannotated protein.
  
  0.775
GCA_000429365_02477
Unannotated protein.
   
 0.757
GCA_000429365_00080
Unannotated protein.
   
  0.743
GCA_000429365_00220
Unannotated protein.
   
  0.743
GCA_000429365_00300
Unannotated protein.
   
  0.743
Your Current Organism:
Pseudodonghicola xiamenensis
NCBI taxonomy Id: 1121479
Other names: Donghicola xiamenensis DSM 18339, P. xiamenensis DSM 18339, Pseudodonghicola xiamenensis DSM 18339
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.