STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OMW_01402Hypothetical protein. (298 aa)    
Predicted Functional Partners:
OMW_01403
3-keto-L-gulonate-6-phosphate decarboxylase.
 
 
 0.999
OMW_01401
L-ribulose-5-phosphate 4-epimerase.
  
 0.992
OMW_01404
PTS system ascorbate-specific transporter subunit IIB.
 
  
 0.963
OMW_01471
L-ribulose-5-phosphate 4-epimerase.
  
 0.961
OMW_01405
PTS system ascorbate-specific transporter subunit IIC.
 
   
 0.926
OMW_01407
L-ascorbate 6-phosphate lactonase, UlaG.
 
   
 0.903
OMW_01406
Hypothetical protein.
 
     0.898
OMW_01747
Amino acid permease.
       0.573
OMW_01409
Hypothetical protein.
 
   
 0.558
OMW_01400
Hypothetical protein.
       0.489
Your Current Organism:
Enterococcus columbae
NCBI taxonomy Id: 1121865
Other names: E. columbae DSM 7374 = ATCC 51263, Enterococcus columbae ATCC 51263, Enterococcus columbae ATCC 51263 = DMS 7374, Enterococcus columbae CCUG 27894, Enterococcus columbae CIP 103675, Enterococcus columbae DSM 7374, Enterococcus columbae DSM 7374 = ATCC 51263, Enterococcus columbae EnGen0384, Enterococcus columbae LMG 11740, Enterococcus columbae NBRC 100677, Enterococcus columbae NCFB 13013, Enterococcus columbae NCIMB 13013, Enterococcus columbae STR 345
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