STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWR60_07280Unannotated protein. (180 aa)    
Predicted Functional Partners:
BWR60_07285
Unannotated protein.
  
  0.839
GCA_000423185_06741
Unannotated protein.
    
  0.789
BWR60_30455
Unannotated protein.
    
  0.684
hemF
Unannotated protein; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
 
      0.674
BWR60_07275
Unannotated protein; Belongs to the DEAD box helicase family.
   
   0.624
BWR60_07795
Unannotated protein.
   
    0.522
cobB
Unannotated protein; Belongs to the sirtuin family. Class III subfamily.
   
 0.438
BWR60_27500
Unannotated protein.
    
 0.412
BWR60_31695
Unannotated protein.
   
    0.403
Your Current Organism:
Inquilinus limosus
NCBI taxonomy Id: 1122125
Other names: I. limosus DSM 16000, Inquilinus limosus DSM 16000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.