STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE96232.1Ribonuclease Z. (269 aa)    
Predicted Functional Partners:
SHE96255.1
Hypothetical protein.
       0.773
SHE96211.1
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
  
    0.728
SHF15165.1
Acetyltransferase (GNAT) family protein.
 
      0.653
SHE78300.1
Uncharacterized conserved protein YdhG, YjbR/CyaY-like superfamily, DUF1801 family.
 
      0.631
SHF34113.1
Tetratricopeptide repeat-containing protein.
   
   0.527
SHE75379.1
ABC-2 family transporter protein.
 
     0.505
SHE96278.1
EDD domain protein, DegV family.
  
    0.498
SHE33086.1
Thiamine pyrophosphokinase.
    
  0.488
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.462
SHE29472.1
Glyoxylase, beta-lactamase superfamily II.
     
 0.435
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.