STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF48158.1Nicotinamidase-related amidase. (188 aa)    
Predicted Functional Partners:
SHF48174.1
Adenosine kinase.
 
    0.918
SHF48206.1
Hypothetical protein.
 
     0.910
SHF48235.1
Tryptophan synthase, alpha chain.
 
     0.899
SHF48191.1
Uridine phosphorylase.
 
     0.897
SHF48095.1
Basic membrane protein A.
 
     0.865
SHF48126.1
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.846
SHF48141.1
Nucleoside ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.843
SHF08285.1
Urea carboxylase.
    
  0.841
cobB
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
 0.788
SHE69214.1
NAD-dependent deacetylase.
  
 0.788
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.