STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI92421.1Hypothetical protein. (181 aa)    
Predicted Functional Partners:
SHI92447.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.802
SHI92465.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.794
SHI92489.1
Competence protein ComFB.
       0.719
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.718
SHI92400.1
Hypothetical protein.
       0.697
SHI92533.1
Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
       0.668
SHI92302.1
Type IV pilus assembly protein PilM.
       0.577
SHI92321.1
Type IV pilus assembly protein PilN.
       0.577
SHI92347.1
Type IV pilus assembly protein PilO.
       0.577
SHI92278.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
       0.532
Your Current Organism:
Lutispora thermophila
NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.