STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ07524.1Hypothetical protein. (574 aa)    
Predicted Functional Partners:
SHI48629.1
Hypothetical protein.
  
     0.749
SHJ08390.1
GAF sensor signal transduction histidine kinase.
  
 
 0.747
SHI96080.1
GAF domain-containing protein.
  
 
 0.746
SHI82266.1
Putative exonuclease, RdgC.
  
     0.742
SHI59272.1
HDIG domain-containing protein.
  
 
 0.714
SHJ83991.1
PAS domain S-box-containing protein.
  
 
 0.714
SHI78162.1
LPS export ABC transporter protein LptC.
  
     0.713
SHJ57837.1
Protein of unknown function.
  
     0.712
SHJ38795.1
Hypothetical protein.
  
     0.687
SHJ21635.1
Hypothetical protein.
  
     0.653
Your Current Organism:
Malonomonas rubra
NCBI taxonomy Id: 1122189
Other names: M. rubra DSM 5091, Malonomonas rubra DSM 5091
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.