STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA23509.1Protein of unknown function. (99 aa)    
Predicted Functional Partners:
SKA23561.1
Protein of unknown function.
 
     0.796
SJZ39497.1
Predicted transcriptional regulators.
  
     0.774
rbpA-2
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.774
SKA23036.1
Protein of unknown function.
  
     0.767
SKA28707.1
Protein of unknown function.
  
     0.766
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.765
SJZ46380.1
YggT family protein.
  
     0.763
SJZ64423.1
Protein of unknown function.
  
     0.762
SKA24020.1
Protein of unknown function.
  
     0.760
SJZ64677.1
Protein of unknown function.
  
     0.758
Your Current Organism:
Marinactinospora thermotolerans
NCBI taxonomy Id: 1122192
Other names: M. thermotolerans DSM 45154, Marinactinospora thermotolerans DSM 45154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.