STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifBFeMo cofactor biosynthesis protein NifB. (300 aa)    
Predicted Functional Partners:
nifH1
Nitrogenase iron protein 1.
 
  
 0.762
nifD
Nitrogenase molybdenum-iron protein alpha chain.
 
  
 0.622
acsC_1
Corrinoid/iron-sulfur protein large subunit.
     
 0.514
moaD
Molybdopterin synthase sulfur carrier subunit.
  
  
 0.512
GCA_000711905_00125
Hypothetical protein.
       0.497
ftrC
Ferredoxin-thioredoxin reductase, catalytic chain.
       0.497
moaA_2
GTP 3',8-cyclase.
    
0.487
Your Current Organism:
Methermicoccus shengliensis
NCBI taxonomy Id: 1122233
Other names: M. shengliensis DSM 18856, Methermicoccus shengliensis DSM 18856
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.