STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdFAminopeptidase YpdF. (390 aa)    
Predicted Functional Partners:
hddC
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
    
 0.838
ydcP
Putative protease YdcP.
     
 0.805
dpp5
Dipeptidyl-peptidase 5.
   
 
 0.801
GCA_000711905_01149
Hypothetical protein.
       0.777
DNPH1_2
2'-deoxynucleoside 5'-phosphate N-hydrolase 1.
       0.773
trxB
Thioredoxin reductase.
    
 0.763
GCA_000711905_01528
Hypothetical protein.
    
 0.753
map
Methionine aminopeptidase.
 
  
 0.702
aroC
Chorismate synthase.
  
 
  0.687
pyrE_2
Orotate phosphoribosyltransferase.
  
    0.678
Your Current Organism:
Methermicoccus shengliensis
NCBI taxonomy Id: 1122233
Other names: M. shengliensis DSM 18856, Methermicoccus shengliensis DSM 18856
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