STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000421185_00333Unannotated protein. (390 aa)    
Predicted Functional Partners:
GCA_000421185_01629
Unannotated protein.
 
 
  0.804
GCA_000421185_01718
Unannotated protein.
  
     0.775
tadA
Unannotated protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
 
    0.724
GCA_000421185_02455
Unannotated protein.
    
 0.678
GCA_000421185_02688
Unannotated protein.
 
 
  0.674
GCA_000421185_00332
Unannotated protein.
       0.564
GCA_000421185_00334
Unannotated protein.
       0.520
GCA_000421185_00331
Unannotated protein.
  
    0.493
GCA_000421185_00685
Unannotated protein.
   
 
  0.400
GCA_000421185_00686
Unannotated protein.
   
 
  0.400
Your Current Organism:
Ornithinimicrobium pekingense
NCBI taxonomy Id: 1122622
Other names: O. pekingense DSM 21552, Ornithinimicrobium pekingense DSM 21552, Ornithinimicrobium pekingense LW6, Ornithinimicrobium pekingense str. DSM 21552, Ornithinimicrobium pekingense strain DSM 21552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.