STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ornUnannotated protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (196 aa)    
Predicted Functional Partners:
purL
Unannotated protein; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
     0.656
GCA_000421185_00134
Unannotated protein.
   
 0.639
GCA_000421185_03122
Unannotated protein.
       0.626
GCA_000421185_03124
Unannotated protein.
       0.610
GCA_000421185_03125
Unannotated protein.
       0.610
GCA_000421185_03126
Unannotated protein.
       0.610
GCA_000421185_00277
Unannotated protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
   
 0.569
GCA_000421185_01823
Unannotated protein.
  
  
 0.565
rph
Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
  
 0.534
whiB-4
Unannotated protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.521
Your Current Organism:
Ornithinimicrobium pekingense
NCBI taxonomy Id: 1122622
Other names: O. pekingense DSM 21552, Ornithinimicrobium pekingense DSM 21552, Ornithinimicrobium pekingense LW6, Ornithinimicrobium pekingense str. DSM 21552, Ornithinimicrobium pekingense strain DSM 21552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.