STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF12727.1Hypothetical protein. (147 aa)    
Predicted Functional Partners:
SMF12709.1
Hypothetical protein.
       0.773
SMF12718.1
Protein of unknown function.
       0.773
SMF12739.1
Protein of unknown function.
       0.752
SMF12753.1
Type VI secretion system secreted protein VgrG.
       0.752
SMF12922.1
Type VI secretion system protein ImpF.
       0.711
SMF12935.1
Type VI secretion system protein ImpK.
       0.711
SMF12944.1
Type VI secretion system protein ImpJ.
       0.711
SMF12956.1
Type VI secretion system protein VasD.
       0.523
SMF12684.1
Uncharacterized alpha/beta hydrolase domain.
       0.489
SMF12695.1
Protein of unknown function.
       0.489
Your Current Organism:
Pseudogulbenkiania subflava
NCBI taxonomy Id: 1123014
Other names: P. subflava DSM 22618, Pseudogulbenkiania subflava BP-5, Pseudogulbenkiania subflava DSM 22618, beta proteobacterium KMU-BP-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.