STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO62392.1Ribosomal protein S18 acetylase RimI. (173 aa)    
Predicted Functional Partners:
SHO67553.1
Uncharacterized conserved protein, DUF1778 family.
   
   0.802
ureB
Urease subunit gamma/beta; Belongs to the urease beta subunit family.
  
 
  0.658
SHO63602.1
Hypothetical protein.
  
     0.620
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
    
  0.613
SHO65994.1
Cupin domain-containing protein.
    
 0.572
SHO66933.1
Transcriptional regulator, XRE family with cupin sensor.
   
 
 0.536
SHO60035.1
[SSU ribosomal protein S5P]-alanine acetyltransferase.
 
 
  0.523
SHO62655.1
Phasin.
 
     0.512
SHO64089.1
Protein of unknown function.
  
     0.496
SHO62391.1
Mechanosensitive ion channel.
       0.463
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.