STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO67406.1Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist. (328 aa)    
Predicted Functional Partners:
SHO67407.1
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  0.992
SHO67400.1
Spermidine/putrescine transport system substrate-binding protein.
 
     0.782
SHO61131.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.763
SHO61132.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
    
  0.763
SHO67399.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
     0.731
SHO67405.1
Proline iminopeptidase; Belongs to the peptidase S33 family.
 
     0.706
SHO67404.1
Transcriptional regulator, DeoR family.
 
     0.685
SHO67403.1
Spermidine/putrescine transport system permease protein.
 
     0.644
SHO67401.1
Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.629
SHO67402.1
Spermidine/putrescine transport system permease protein.
 
     0.589
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
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